Bible Commentaries

John 3:1-13 Christ, in a conference with Nicodemus, teacheth him

the necessity of regeneration,

John 3:14,15 the efficacy of faith in his death.

John 3:16,17 God’s great love to mankind in sending his Son for

their salvation,

John 3:18-21 and the condemnation for unbelief.

John 3:22 Jesus baptizeth in Judea,

John 3:23,24 as doth John in Aenon.

John 3:25-36 John’s doctrine concerning Christ.

The particle there being put in only to fit our idiom to the Greek, where is nothing but the verb, signifies nothing to prove that what we read in this chapter was done at Jerusalem. It is a dispute amongst some interpreters, whether he was there or no. It should seem by John 7:50, that Nicodemus’s chief residence was there. He was one of the Pharisees, who were a sect (as we have showed before) which had their name either from a Hebrew word, which signifieth to explain, (because they were expounders of the law), or from another word, which signifieth to divide, because they were separate from others: the opinions have both learned patrons. This man’s name in Greek signifies, The victory of the people. He was either the head of a family among the Jews, or a ruler of the synagogue, or one of the sanhedrim: it seemeth most probable he is here called a ruler upon the last account, if we consider John 7:50.

He came by night to Christ, not, as some (too charitably) possibly may think, that he might have the freer and less interrupted communion and discourse with him; but either through fear, or possibly shame, being a master in Israel, to be looked upon as a scholar going to learn of another. He saluteth him by the name they usually gave to their teachers, (as we showed, John 1:49), and saith,

we know, by which he hints to us, that not only he, but others of the Pharisees also, knew that he was a teacher sent from God in a more extraordinary manner; and he giveth the reason of this their knowledge, because of those miraculous operations which he had wrought. God hath his number among all orders and sorts of men; and those that are his shall come unto Christ. There was a weakness in the faith and love of this Nicodemus; (his station amongst the Jews was a great temptation to him); but yet there was a truth of both in him, which further discovered itself, John 7:50, and more upon Christ’s death, John 19:39. But here ariseth a greater question, viz. How Nicodemus could conclude that Christ was a teacher sent from God, by his miracles.

Answer. It is to be observed, that he doth not say, in the general, that no man does signs or wonders of any kind, unless the power and favour of God be with him. But he speaks particularly and eminently of those things which Jesus did; they were so great in their nature, so real and solid in their proof, so Divine in the manner of performing them by the empire of his will; so holy in their end, to confirm a doctrine most becoming the wisdom and other glorious attributes of God, and that were the verification of the prophecies concerning the Messiah, whose coming it was foretold should be with miraculous healing benefits; that there was the greatest assurance, that none without the omnipotent hand of God could do them; for it is clear by the light of reason and Scripture, that God will not assist by his almighty power the ministers of Satan, to induce those who sincerely search for truth to believe a lie. The magicians indeed performed divers wonders in Egypt, but they were outdone by Moses, to convince the spectators that he was sent from a power infinitely superior to that of evil spirits. Real miracles, that are contrary to the order and exceed the power of nature, can only be produced by creating power, and are wrought to give credit to those who are sent from God. And when God permits false miracles to be done by seducers, that would thereby obtain authority and credit amongst men, the deception is not invincible; for it is foretold expressly to give us warning, that the man of sin shall come with lying wonders, by the working of Satan, 2 Thessalonians 2:9; and the heavenly doctrine of the gospel has been confirmed by real miracles, incomparably greater than all the strange things done to give credit to doctrines opposite to it.

We observed before, that the term answered doth not always in the New Testament signify a reply to a question before propounded; but sometimes no more than a reply, or the beginning of another speech: whether it doth so here or no, some question. Some think Christ here gives a strict answer to a question which Nicodemus had propounded to him, about the way to enter into the kingdom of God; which question the evangelist sets not down, but leaves to the reader to gather from the answer. Others think that our Saviour knew what he would say, and answered the thoughts of his heart. Others, that he only began a discourse to him about what was highly necessary for him, that was a master in Israel, to understand and know. He begins his discourse with

Verily, verily, the import of which we considered, John 1:51. The word translated again, is anwyen, which often signifieth from above; so it signifieth, John 3:31 Jam 1:17 3:15-17. It also signifieth again: Galatians 4:9, How turn ye again to the weak and beggarly elements? That it must be so translated here, and John 3:7, appeareth from Nicodemus’s answer in the next verse. But the expression of the second or new birth by this word, which also signifies from above, may possibly reach us, that the new birth must be wrought in the soul from above by the power of God, which is what was said before, John 1:12,13, the necessity of which our Saviour presseth from the impossibility otherwise of his seeing the

kingdom of God; by which some understand the kingdom of his glory (as the phrase is used, Luke 18:24,25); others understand it of the manifestation of Christ under the gospel state, or the vigour, power, and effect of the gospel, and the grace thereof. By seeing of it, is meant enjoying, and being made partakers of it, as the term is used, Psalm 16:10 John 16:10 Revelation 18:7. The Jews promised their whole nation a place in the kingdom of the Messiah, as they were born of Abraham, Matthew 3:9; and the Pharisees promised themselves much from their observation of the law, &c. Christ lets them know neither of these would do, but unless they were wholly changed in their hearts and principles (for so much being born again signifieth; not some partial change as to some things, and in some parts) they could never have any true share, either in the kingdom of grace in this life, or in the kingdom of glory in that life which is to come. It is usual by the civil laws of countries, that none enters into the possession of an earthly kingdom but by the right of birth; and for the obtaining the kingdom of heaven, there must be a new birth, a heavenly renovation of the whole man, soul, body, and spirit, to give him a title, by the wise and unchangeable constitution of God in the gospel, and to qualify him for the enjoyment of it.

By the answer of Nicodemus, it should seem that he was an old man; which is also probable, because he was one of the rulers: he puts the case as to himself; I am, saith he, an old man, how should I be born? Can a man

enter the second time into his mother’s womb, and be born? How true is that of the apostle, 1 Corinthians 2:14, The natural man receiveth not the things of the Spirit of God! What a gross conception doth Nicodemus (though doubtless a learned as well as a great man) discover of regeneration, as if it could not be without a man’s mother travailing in birth with him a second time! Nicodemus’s question discovers a great deal of ignorance and weakness, but yet a great deal of simplicity and plainness in him; that he did not come, as the Pharisees generally were wont to come to Christ, to catch him by captious questions, but brought discendi pietatem, a pious desire to learn from him, and to be instructed by him. The Pharisees had been used to study the traditions of the elders, and spent their time about unprofitable niceties, as to the meaning of the law; so were not at all versed in the great things which concerned the kingdom of God. The like instance hath been in later ages, the popish divines spending their time generally about nice school questions, showing themselves much ignorant of spiritual things, and the great mysteries of the kingdom of God.

To excite his spirit and attention, our Saviour again expresses the authority of his person,

I say; and twice repeats the solemn asseveration,

Verily, verily, to show the infallible certainty and importance of what he propounds, that it is a truth worthy of his most serious consideration, and to be embraced with a stedfast belief. After this preface, he declares, If any one be not born of water and the Spirit, to rectify the carnal conceit of Nicodemus about regeneration. In John 3:3 our Saviour compared the spiritual birth with the natural, and with respect to that a reviewed man is born a second time. But in this verse he expresses the cause and quality of the new birth, that distinguishes it from the natural birth, and resolves the vain, carnal objection of Nicodemus. He speaks not of the terrestrial, animal birth, but of the celestial and Divine; that is suitable to that principle from whence it proceeds, the Holy Spirit of God. There is a great difference among interpreters about the meaning of being

born of water. The Romanists, and rigid Lutherans, understand the water in a proper sense, for the element of baptism, and from hence infer the absolute necessity of baptism for salvation; but the exposition and conclusion are both evidently contrary to the truth. Indeed the new birth is signified, represented, and sealed by baptism, it is the soul, and substance of that sacred ceremony; and if our Saviour had only said, that whoever is born of water and the Spirit shall enter into the kingdom of heaven, it might have been congruously understood of baptism; because it is an undoubted truth, that all who are truly regenerated in baptism shall be saved. But our Saviour says, He that is not born of water and the Spirit cannot enter into the kingdom of heaven: the exclusion of the unsanctified is peremptory and universal. And our Saviour shows a manifest difference between an affirmative and negative proposition; when having declared, that whoever believeth and is baptized shall be saved; and coming to the negative, he only adds, but he that believeth not shall be damned, Mark 16:16. The reason why he does not say, Whoever is not baptized shall be condemned, is evident; for without faith it is impossible to be saved; but without baptism, even as the Romanists themselves grant, many have been saved. For if we consider the time when our Saviour spake these words, they acknowledge that believers were not then, obliged to receive the baptism of Christ for salvation; for our Saviour had this conference with him some years before his death; and they hold, that before the death of Christ baptism was not necessary, neither by virtue of Divine command, nor as a means to obtain salvation; therefore the believers that lived then might enter into heaven without baptism. They also declare, that martyrdom supplies the want of baptism; and that persons instructed in the doctrine of the gospel, and sincerely believing it, if prevented by death without being baptized, their faith and earnest desire is sufficient to qualify them for partaking of the heavenly kingdom. But if by water here be meant the elementary water of baptism, the words of our Saviour are directly contrary to what they assert; for neither the blood of martyrs, nor the desire and vow of receiving baptism, are the water of baptism, which they pretend is properly and literally named by our Saviour. And certainly, if as the apostle Peter instructs us, it is not the cleansing of the flesh in the water of baptism that says, 1 Peter 3:21, it is not the mere want of it, without contempt and wilful neglect, that condemneth. By

water then we are to understand the grace of the Holy Spirit in purifying the soul, which is fitly represented by the efficacy of water. And this purifying, refreshing virtue of the Spirit is promised in the prophecies that concern the times of the Messiah, under the mystical expression of water. Thus it is twofold by Isaiah, I will pour water upon him that is thirsty, and floods upon the dry ground, Isaiah 44:3. And this is immediately explained, I will pour my Spirit upon thy seed; and the Divine birth follows, they shall spring up as among the grass. In the same manner the effects of the Holy Spirit are expressed by Ezekiel: I will sprinkle clean water upon you, and ye shall be clean; and presently after, I will put my Spirit within you, Ezekiel 36:25,27. Our Saviour instructing a Pharisee, to whom the prophetical writings were known, expressly uses these two words, and in the same order as they are all set down there, first water, and then the Spirit, that the latter might interpret the former; for water and the Spirit, by a usual figure when two words are employed to signify the same thing, signify spiritual water, that is, his Divine grace in renewing the soul; as when the apostle says, in demonstration of the Spirit and of power, to signify the powerful Spirit. Thus John the Baptist foretold of Christ, that he should baptize with the Holy Ghost and fire, that is, with the Spirit, that has the force and efficacy of fire to refine us from our dross and corruptions. Thus our Saviour plainly instructs Nicodemus of the absolute necessity of an inward spiritual change and renovation, thereby showing the inefficacy of all the legal washings and sprinklings, that could not purify and make white one soul, which were of high valuation among the Jews. Entering into the kingdom of God, is of the same import and sense with the seeing the kingdom of God, in John 3:3: that is, without regeneration no man can truly be joined with the society of the church of God, nor partake of the celestial privileges and benefits belonging to it, here and hereafter.

That which is born of the flesh: that which is born of natural flesh; for flesh sometimes signifies the man. So the prophet saith, All flesh is grass, Isaiah 40:6. So Genesis 6:12, All flesh, that is, all men, had corrupted their way. Or, that which is born of corruption, from vitiated and corrupted nature; so flesh is oft taken in Scripture, Romans 8:4,5,8, &c.

Is flesh; that is, it bringeth forth effects proportionable to the cause; a man purely natural brings forth natural operations. Man, as man, moveth, and eateth, and drinketh, and sleepeth. Corrupted man brings forth vicious and corrupt fruit, which often are called the works of the flesh, Galatians 5:19.

Flesh here signifieth the whole man, whether considered abstractly from the adventitious corruption of his nature, or as fallen in Adam, vitiated and debauched through lust.

And that which is born of the Spirit is spirit: but that man or woman who is regenerated by the Spirit of grace is spiritual; he is after the Spirit, Romans 8:5; he is one spirit with God, 1 Corinthians 6:17; he is made partaker of the Divine nature, 2 Peter 1:4; he doth not commit sin, 1Jo 3:9. Nothing in operation exceedeth the virtue of that cause which influences it; so as no man from a mere natural principle can perform a truly spiritual operation; and from hence it is absolutely necessary that man must be born of the Spirit, that he may be qualified for the kingdom of heaven.

There is a twofold admiration, that which is joined with infidelity, and that which is the effect of faith. Our Saviour forbids Nicodemus to marvel at the doctrine of regeneration, as strange and incredible, upon an imaginary impossibility supposed by him of the thing itself. But he that believes will judge that supernatural work of the Spirit, whereby a sinful man is made a partaker of the Divine nature, worthy of the highest admiration. And what our Saviour had said in the general before, that a man must be born again, he now particularly applies to Nicodemus, with those of his order,

Ye must be born again. For Nicodemus would easily consent that the pagans, and possibly the vulgar Jews, had need of regeneration, to partake of the kingdom of God; but that the doctors of the law, (of which number himself was), esteemed the lights of the world, should be under the same necessity, was astonishing to him. Therefore our Saviour, to undeceive and humble him, saith,

Ye must be born again, for that all are defiled with the corruption that is universal to mankind.

The word which is translated wind, being the same which both here and ordinarily in Scripture is translated spirit, hath given interpreters a great liberty to abound in their several senses. Some thinking that it should be translated, The spirit, that is, the spirit of a man, breatheth where it listeth; and that our Saviour’s sense was, Nicodemus, thou needest not to wonder that thou canst not with thy senses perceive the spiritual new birth, for thou canst not understand the natural birth. Others think it should be translated, The Spirit, that is, the Spirit of God, bloweth where it listeth; but that seemeth not probable, because of these words,

so is every one that is born of the Spirit; which will hardly be sense if we understand the first part of the verse concerning the same Spirit; and our Saviour saith, John 3:12, If I have told you earthly things, and ye believe not: they seem therefore best to understand it, who interpret it of a terrene spirit, particularly the wind, which is of a spiritual nature: and thus, by their translation, it is apparent that our interpreters understood it. So as, though our Saviour speaketh of the motions of the blessed Spirit, yet he speaketh of them by way of comparison, comparing them to the motion of the wind, of which he said, that it bloweth where it listeth; not that it is its own mover, and under no government of the First Cause; for the Psalmist tells us, Psalm 148:8, that the stormy winds fulfil God’s word; nor is any such thing compatible to any creature; but the original of its motion is to us imperceptible.

But canst not tell whence it cometh, and whither it goeth: we can speak something philosophically to the cause of it, and can tell whither it bloweth, from the east, west, north, or south; but we cannot tell the particular place, where or from whence it riseth.

So is every one that is born of the Spirit: so every one, who is regenerated from the working of the Holy Spirit of God, is changed and renewed, so as we can give ourselves or others no account of it in all points, as to the inward operation, though in the effects it be discernible.